Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| THCA | rs12239316 | chr1:119119320 | A/C | 3.64E-5 | 490 | 16.23 | 15.33 | 14.57 | KM Plot |
| THCA | rs12239392 | chr1:181553070 | G/A | 1.45E-6 | 484 | 15.67 | 18.02 | 17.77 | KM Plot |
| THCA | rs12241091 | chr10:104808997 | G/A | 5.02E-9 | 490 | 15.2 | 17.73 | 32.1 | KM Plot |
| THCA | rs12241656 | chr10:104709001 | C/T | 3.05E-8 | 489 | 15.33 | 17.33 | 19.1 | KM Plot |
| THCA | rs12242000 | chr10:104702413 | A/C | 5.63E-9 | 489 | 15.17 | 17.73 | 32.1 | KM Plot |
| THCA | rs12245343 | chr10:104774050 | A/G | 5.04E-9 | 490 | 15.2 | 17.73 | 32.1 | KM Plot |
| THCA | rs12245779 | chr10:104645944 | C/A | 5.25E-9 | 488 | 15.2 | 17.73 | 32.1 | KM Plot |
| THCA | rs12246432 | chr10:82270218 | C/T | 7.89E-6 | 486 | 16.27 | 15.17 | 14.93 | KM Plot |
| THCA | rs12246689 | chr10:104817031 | C/T | 5.02E-9 | 490 | 15.23 | 17.68 | 32.1 | KM Plot |
| THCA | rs12251035 | chr10:104671459 | A/C | 6.18E-9 | 488 | 15.17 | 17.68 | 32.1 | KM Plot |
| THCA | rs12252500 | chr10:104794984 | G/C | 5.17E-9 | 488 | 15.23 | 17.68 | 32.1 | KM Plot |
| THCA | rs12253284 | chr10:104665145 | G/C | 3.36E-8 | 488 | 15.33 | 17.13 | 19.1 | KM Plot |
| THCA | rs12253370 | chr10:104996259 | G/C | 1.31E-7 | 487 | 15.23 | 17.93 | 10.17 | KM Plot |
| THCA | rs12253834 | chr10:104646297 | T/C | 5.25E-9 | 488 | 15.2 | 17.73 | 32.1 | KM Plot |
| THCA | rs12254254 | chr10:104765605 | C/T | 5.04E-9 | 490 | 15.2 | 17.73 | 32.1 | KM Plot |